User profiles for Jordan Ramilowski
Jordan A. RamilowskiProfessor, Bioinformatics Lab @Yokohma City University (Japan) Verified email at yokohama-cu.ac.jp Cited by 4557 |
An atlas of human long non-coding RNAs with accurate 5′ ends
Long non-coding RNAs (lncRNAs) are largely heterogeneous and functionally uncharacterized.
Here, using FANTOM5 cap analysis of gene expression (CAGE) data, we integrate …
Here, using FANTOM5 cap analysis of gene expression (CAGE) data, we integrate …
[HTML][HTML] A draft network of ligand–receptor-mediated multicellular signalling in human
Cell-to-cell communication across multiple cell types and tissues strictly governs proper
functioning of metazoans and extensively relies on interactions between secreted ligands and …
functioning of metazoans and extensively relies on interactions between secreted ligands and …
[HTML][HTML] Predicting cell-to-cell communication networks using NATMI
Abstract Development of high throughput single-cell sequencing technologies has made it
cost-effective to profile thousands of cells from diverse samples containing multiple cell types. …
cost-effective to profile thousands of cells from diverse samples containing multiple cell types. …
Functional annotation of human long noncoding RNAs via molecular phenotyping
Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian
genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we …
genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we …
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs
I Abugessaisa, JA Ramilowski, M Lizio… - Nucleic acids …, 2021 - academic.oup.com
The Functional ANnoTation Of the Mammalian genome (FANTOM) Consortium has continued
to provide extensive resources in the pursuit of understanding the transcriptome, and …
to provide extensive resources in the pursuit of understanding the transcriptome, and …
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
…, A Lennartsson, F Drabløs, JA Ramilowski… - Nucleic acids …, 2016 - academic.oup.com
Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian
Genomes collaborative project, FANTOM5, we gathered a series of primary data and database …
Genomes collaborative project, FANTOM5, we gathered a series of primary data and database …
Glycyrrhiza uralensis Transcriptome Landscape and Study of Phytochemicals
JA Ramilowski, S Sawai, H Seki… - Plant and Cell …, 2013 - academic.oup.com
Medicinal and industrial properties of phytochemicals (eg glycyrrhizin) from the root of
Glycyrrhiza uralensis (licorice plant) made it an attractive, multimillion-dollar trade item. …
Glycyrrhiza uralensis (licorice plant) made it an attractive, multimillion-dollar trade item. …
[HTML][HTML] Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles
H Persson, AT Kwon, JA Ramilowski… - Journal of Allergy and …, 2015 - Elsevier
Background Children with problematic severe asthma have poor disease control despite
high doses of inhaled corticosteroids and additional therapy, leading to personal suffering, …
high doses of inhaled corticosteroids and additional therapy, leading to personal suffering, …
Comparative transcriptomics of primary cells in vertebrates
…, E Arner, A Hasegawa, M Lizio, JA Ramilowski… - Genome …, 2020 - genome.cshlp.org
Gene expression profiles in homologous tissues have been observed to be different
between species, which may be due to differences between species in the gene expression …
between species, which may be due to differences between species in the gene expression …
[PDF][PDF] Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types
Within the scope of the FANTOM6 consortium, we perform a large-scale knockdown of 200
long non-coding RNAs (lncRNAs) in human induced pluripotent stem cells (iPSCs) and …
long non-coding RNAs (lncRNAs) in human induced pluripotent stem cells (iPSCs) and …