User profiles for Jordan Ramilowski

Jordan A. Ramilowski

Professor, Bioinformatics Lab @Yokohma City University (Japan)
Verified email at yokohama-cu.ac.jp
Cited by 4557

An atlas of human long non-coding RNAs with accurate 5′ ends

CC Hon, JA Ramilowski, J Harshbarger, N Bertin… - Nature, 2017 - nature.com
Long non-coding RNAs (lncRNAs) are largely heterogeneous and functionally uncharacterized.
Here, using FANTOM5 cap analysis of gene expression (CAGE) data, we integrate …

[HTML][HTML] A draft network of ligand–receptor-mediated multicellular signalling in human

JA Ramilowski, T Goldberg, J Harshbarger… - Nature …, 2015 - nature.com
Cell-to-cell communication across multiple cell types and tissues strictly governs proper
functioning of metazoans and extensively relies on interactions between secreted ligands and …

[HTML][HTML] Predicting cell-to-cell communication networks using NATMI

R Hou, E Denisenko, HT Ong, JA Ramilowski… - Nature …, 2020 - nature.com
Abstract Development of high throughput single-cell sequencing technologies has made it
cost-effective to profile thousands of cells from diverse samples containing multiple cell types. …

Functional annotation of human long noncoding RNAs via molecular phenotyping

JA Ramilowski, CW Yip, S Agrawal, JC Chang… - Genome …, 2020 - genome.cshlp.org
Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian
genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we …

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

I Abugessaisa, JA Ramilowski, M Lizio… - Nucleic acids …, 2021 - academic.oup.com
The Functional ANnoTation Of the Mammalian genome (FANTOM) Consortium has continued
to provide extensive resources in the pursuit of understanding the transcriptome, and …

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

…, A Lennartsson, F Drabløs, JA Ramilowski… - Nucleic acids …, 2016 - academic.oup.com
Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian
Genomes collaborative project, FANTOM5, we gathered a series of primary data and database …

Glycyrrhiza uralensis Transcriptome Landscape and Study of Phytochemicals

JA Ramilowski, S Sawai, H Seki… - Plant and Cell …, 2013 - academic.oup.com
Medicinal and industrial properties of phytochemicals (eg glycyrrhizin) from the root of
Glycyrrhiza uralensis (licorice plant) made it an attractive, multimillion-dollar trade item. …

[HTML][HTML] Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles

H Persson, AT Kwon, JA Ramilowski… - Journal of Allergy and …, 2015 - Elsevier
Background Children with problematic severe asthma have poor disease control despite
high doses of inhaled corticosteroids and additional therapy, leading to personal suffering, …

Comparative transcriptomics of primary cells in vertebrates

…, E Arner, A Hasegawa, M Lizio, JA Ramilowski… - Genome …, 2020 - genome.cshlp.org
Gene expression profiles in homologous tissues have been observed to be different
between species, which may be due to differences between species in the gene expression …

[PDF][PDF] Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types

…, CC Hon, K Yasuzawa, DM Sivaraman, JA Ramilowski… - Cell reports, 2022 - cell.com
Within the scope of the FANTOM6 consortium, we perform a large-scale knockdown of 200
long non-coding RNAs (lncRNAs) in human induced pluripotent stem cells (iPSCs) and …